2.1 |
Class: Nuclear receptors with C4 zinc fingers (C4-NR), Alignment |
Aligned C4-NR domain sequences: |
PKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQH--NYLCAG-RND-CIIDKIRRKNCPACRYRKCLQAGM GR
SKICLVCGDEASGCHYGVVTCGSCKVFFKRAVEGQH--NYLCAG-RND-CIIDKIRRKNCPACRLQKCLQAGM MR
QKICLICGDEASGCHYGVLTCGSCKVFFKRAMEGQH--NYLCAG-RND-CIVDKIRRKNCPACRLRKCCQAGM PR
QKTCLICGDEASGCHYGALTCGSCKVFFKRAAEGKQ--KYLCAS-RND-CTIDKFRRKNCPSCRLRKCYEAGM AR
TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHN--DYMCPA-TNQ-CTIDKNRRKSCQACRLRKCYEVGM ER
AHFCAVCSDYASGYHYGVWSCEGCKAFFKRSIQGHN--DYICPA-TNQ-CTIDKNRRKSCQACRLRKCYEVGM ERbeta
KRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSI--EYSCPA-SNE-CEITKRRRKACQACRFTKCLRVGM ERRalpha
KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNI--EYSCPA-TNE-CEITKRRRKSCQACRFMKCLKVGM ERRbeta
KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNI--EYSCPA-TNE-CEITKRRRKSCQACRFMKCLKVGM ERRgamma
YKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--VYTCHR-DKN-CIINKVTRNRCQYCRLQKCFEVGM RARalpha
YKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM--IYTCHR-DKN-CVINKVTRNRCQYCRLQKCFEVGM RARbeta
YKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNM--VYTCHR-DKN-CIINKVTRNRCQYCRLQKCFEVGM RARgamma
DEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKY-DSC-CVIDKITRNQCQLCRFKKCIAVGM T3Ralpha
DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKY-EGK-CVIDKVTRNQCQECRFKKCIYVGM T3Rbeta
VLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQ-YKRCLK-NEN-CSIVRINRNRCQQCRFKKCLSVGM Rev-erbA-alpha
VLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQ-YKKCLK-NEN-CSIMRMNRNRCQQCRFKKCLSVGM Rev-erbA-beta
PRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKA--LFTCPF-NGD-CRITKDNRRHCQACRLKRCVDIGM VDR
PQICRVCGDKATGYHFNVMTCEGCKGFFRRAMKRNA--RLRCPF-RKGACEITRKTRRQCQACRLRKCLESGM PXR
LRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSI--GPTCPF-AGS-CEVSKTQRRHCPACRLQKCLDAGM CAR
NIECRICGDKASGYHYGVHACEGCKGFFRRTIRLKLV-YDKC---DRS-CKIQKKNRNKCQYCRFHKCLSVGM PPARalpha
NMECRVCGDKASGFHYGVHACEGCKGFFRRTIRMKLE-YEKC---ERS-CKIQKKNRNKCQYCRFQKCLALGM PPARbeta
AIECRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLI-YDRC---DLN-CRIHKKSRNKCQYCRFQKCLAVGM PPARgamma
IIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNA--TYSCPR-QKN-CLIDRTSRNRCQHCRLQKCLAVGM RORalpha
VIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNA--SYSCPR-QRN-CLIDRTNRNRCQHCRLQKCLALGM RORbeta
VIPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNA--AYSCTR-QQN-CPIDRTSRNRCQHCRLQKCLALGM RORgamma
NELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGA--HYICHS-GGH-CPMDTYMRRKCQECRLRKCRQAGM LXRalpha
HELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVRGGARRYACRG-GGT-CQMDAFMRRKCQQCRLRKCKEAGM LXRbeta
DELCVVCGDRASGYHYNALTCEGCKGFFRRSITKNA--VYKCKN-GGN-CVMDMYMRRKCQECRLRKCKEMGM FXR
KHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDL--TYTCRD-NKD-CLIDKRQRNRCQYCRYQKCLAMGM RXRalpha
RKLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDL--TYSCRD-NKD-CTVDKRQRNRCQYCRYQKCLATGM RXR-beta
KHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDL--IYTCRD-NKD-CLIDKRQRNRCQYCRYQKCLVMGM RXRgamma
SALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNH--MYSCRF-SRQ-CVVDKDKRNQCRYCRLKKCFRAGM HNF4alpha
NCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSH--VYSCRF-SRQ-CVVDKDKRNQCRYCRLRKCFRAGM HNF4gamma
DIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNR--TYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNM Tlx
SLQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRL--IYRCQVGA-GMCPVDKAHRNQCQACRLKKCLQAGM PNR
FDLCVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNL--VYSCRG-SKD-CIINKHHRNRCQYCRLQRCIAFGM TR2
VEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNL--TYSCRS-NQD-CIINKHHRNRCQFCRLKKCLEMGM TR4
HIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNL--TYTCRA-NRN-CPIDQHHRNQCQYCRLKKCLKVGM COUP-TFI
HIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNL--SYTCRA-NRN-CPIDQHHRNQCQYCRLKKCLKVGM COUP-TFII
QVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNL--SYTCRS-NRD-CQIDQHHRNQCQYCRLKKCFRVGM EAR2
EGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNA--KYICLA-NKD-CPVDKRRRNRCQFCRFQKCLAVGM NGFI-B/TR3
EGLCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNA--KYVCLA-NKN-CPVDKRRRNRCQYCRFQKCLAVGM NURR1
EGTCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNA--KYVCLA-NKN-CPVDKRRRNRCQYCRFQKCLSVGM NOR-1
DELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNK--HYTCTE-SQS-CKIDKTQRKRCPFCRFQKCLTVGM FTZ-F1
EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNK--RYTCIE-NQN-CQIDKTQRKRCPYCRFQKCLSVGM LRH-1
QRTCLICGDRATGLHYGIISCEGCKGFFKRSICNKR..VYRCSR-DKN-CVMSRKQRNRCQYCRLLKCLQMGM GNCF